PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA06g27840

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 119aa MW: 13441.8 Da PI: 6.5061

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA06g27840	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.4	0.00011	49	71	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C++ F++ L H++ H CA06g27840 49 YECVFCKRGFNTAQALGGHMNIH 71 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.72E-7	45	77	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.5E-4	46	75	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	1.1E-5	49	73	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.949	49	76	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	51	71	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 119 aa Download sequence Send to blast
MTSNKIDDLL MESSNQGDYS LNSSINKEVD QLQQDRQEYY YMGGGGRFYE CVFCKRGFNT 60 AQALGGHMNI HRKDKSTRNK PTTSTHNLLI SSSTNKNDIH ISSGEYSESD PGFNYFMF*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016577442.1	1e-71	PREDICTED: transcriptional regulator TAC1-like
TrEMBL	K4CAP9	1e-35	K4CAP9_SOLLC; Uncharacterized protein
TrEMBL	M1BS15	1e-34	M1BS15_SOLTU; Uncharacterized protein
STRING	Solyc06g083940.1.1	3e-35	(Solanum lycopersicum)
STRING	PGSC0003DMT400051678	4e-34	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2136	21	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53820.1	4e-15	C2H2 family protein