PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g27840
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 119aa    MW: 13441.8 Da    PI: 6.5061
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g27840genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.000114971123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y+C  C++ F++   L  H++ H
  CA06g27840 49 YECVFCKRGFNTAQALGGHMNIH 71
                99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.72E-74577No hitNo description
Gene3DG3DSA:3.30.160.602.5E-44675IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.1E-54973IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.9494976IPR007087Zinc finger, C2H2
PROSITE patternPS0002805171IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MTSNKIDDLL MESSNQGDYS LNSSINKEVD QLQQDRQEYY YMGGGGRFYE CVFCKRGFNT  60
AQALGGHMNI HRKDKSTRNK PTTSTHNLLI SSSTNKNDIH ISSGEYSESD PGFNYFMF*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016577442.11e-71PREDICTED: transcriptional regulator TAC1-like
TrEMBLK4CAP91e-35K4CAP9_SOLLC; Uncharacterized protein
TrEMBLM1BS151e-34M1BS15_SOLTU; Uncharacterized protein
STRINGSolyc06g083940.1.13e-35(Solanum lycopersicum)
STRINGPGSC0003DMT4000516784e-34(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21362152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.14e-15C2H2 family protein